Alexis Battle, PhD

Research Interests

Alexis Battle is a 2016 Searle Scholar and a professor of biomedical engineering and computer science, with a secondary appointment in genetic medicine. She is the director of the Malone Center for Engineering in Healthcare and deputy director of the Data Science and AI Institute.  She specializes in unlocking secrets of the human genome by analyzing large-scale genomic sequencing data to understand the impact of genetic variation on the human body.

Battle’s research is concentrated on the development of computational biology tools and machine-learning strategies to examine genetic differences on gene regulation and disease. A leading member of the National Institutes of Health’s (NIH) Genotype-Tissue Expression (GTEx) Consortium, she focuses on predicting the effects of variation in noncoding DNA sequences.  Findings of her work on a GTEx project, which studied how genetic patterns lead to molecular changes within specific tissues, were published in 2017 in the journal Nature.

At JHU’s “Battle Lab” her research also includes development of new methods to evaluate and predict the impact of personal genomics, and rare genetic variants that may significantly impact an individual’s health.  These methods are helping to improve understanding of how genes work together and how their interconnected pathways may influence complex traits.  Additionally, Battle is involved in a host of ongoing research initiatives, from building integrative networks for genomic analysis of autism, supported by NIH, to predicting rare Mendelian disease variants using genomic data, funded by her Searle award and 2017 JHU Catalyst Award.  She is also the recipient of a 2019 Johns Hopkins Discovery Award for studying the genetics of atherosclerotic cardiovascular disease.

Battle received her formal education from Stanford University, where she earned a BS in 2003, an MS in 2013, and a PhD in computer science in 2013. She worked as a postdoctoral researcher at Stanford before joining Hopkins in 2014. Prior to her career in academia, Battle was a staff software engineer and manager for Google.

Titles

• Professor, Biomedical Engineering, Computer Science and Genetic Medicine
• Director, Malone Center for Engineering in Healthcare
• Deputy Director, Data Science & AI Institute

Affiliated Centers & Institutes

• Center for Computational Biology
• Data Science & AI Institute
• Malone Center for Engineering in Healthcare
• Mathematical Institute for Data Science (MINDS)

Education

• PhD, Computer Science, Stanford University, 2013
• MS, Computer Science, Stanford University, 2013
• BS, Symbolic Systems, Stanford University, 2003

Recent Highlights

October 17, 2024

Hopkins joins Cancer AI Alliance

Johns Hopkins and Kimmel Cancer Center researchers collaborate on big data science.

• July 3, 2024
  News Brief: Alexis Battle and Rama Chellappa named co-directors of DSAI
  Effective July 1, Alexis Battle and Rama Chellappa will serve as interim co-directors of the Johns Hopkins Data Science and AI Institute.
• April 12, 2022
  Alexis Battle named director of Malone Center for Engineering in Healthcare
  Alexis Battle, associate professor in biomedical engineering with secondary appointments in computer science and the department of genetic medicine at Johns Hopkins School of Medicine, will become the new director of the Malone Center for Engineering in Healthcare on September 1.
• January 26, 2022
  Alexis Battle receives President’s Frontier Award
  In a surprise move this year, the university recognizes two faculty members with the full award; each will receive $250,000 to support their groundbreaking research.